Knowledge Platform
A Gateway to Biodiversity Genomics Knowledge
Knowledge Platform
The BGE+ Knowledge Platform is the central hub for project outputs, resources, news, publications, tools, and community activities.
Building on the legacy of the original Biodiversity Genomics Europe platform, it provides a shared space where researchers, stakeholders, and the public can access information and stay connected with project developments.
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| Type | Title | Author | Tags | |||||
|---|---|---|---|---|---|---|---|---|
| Node development, Sampling, Sequencing, Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/spotlight.png | BGE Video resources | BGE Consortium | DNA Barcoding | 2026-04-28 | https://drive.google.com/file/d/13ugseFeZ145-6HibZ-d0TnVGA_jjS6kI/view?usp=sharing | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/spotlight.png | Genome Reports | BGE Consortium | Reference Genomes | 2026-03-31 | https://drive.google.com/file/d/146fmkC9N_lyCPaam8efSCn0wVPydYRWr/view?usp=sharing | |
| Node development, Sampling, Sequencing, Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/spotlight.png | Research Papers | BGE Consortium | DNA Barcoding | 2026-03-31 | https://drive.google.com/file/d/1KD38m8jzm_jogQ3fwj1lupm0_Bl7ybs0/view?usp=sharing | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/spotlight.png | Reference Genome methods | BGE Consortium | Genome Sequencing | 2026-03-31 | https://drive.google.com/file/d/11z1TGj9y1ou_YoXDscnJVZ7MO8CFR-O7/view?usp=sharing | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/spotlight.png | DNA Barcoding methods | BGE Consortium | DNA Barcoding | 2026-03-31 | https://drive.google.com/file/d/1CduTolDeh3GoNvpuJFZyyjSjLdpoviI5/view?usp=sharing | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Genome Reports from the Biodiversity Genomics Europe Project | Robert Waterhouse, Camila Mazzoni, Claudio Ciofi | ERGA | 2026-02-19 | https://open-research-europe.ec.europa.eu/collections/bge/about | |
| Sampling, Sequencing, Data, Application | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | ERGA “BioGenome Analysis & Applications” seminar series (a playlist of recorded talks & slides) | ERGA Community | applications | 2026-02-19 | https://www.youtube.com/playlist?list=PL4qmCfIUT9K_ElJnpD1aKU3QTBdoTdRJL | |
| Application | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | BGE Genome Applications Symposium 1 | BGE Consortium | ERGA | 2026-02-19 | https://www.erga-biodiversity.eu/post/genome-applications-symposium | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | DNA-barcoding using nanopores: Bridging theory to real-world implementation | iBOL Europe | DNA Barcoding | 2026-02-19 | ||
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | Development of Curated Reference Libraries | iBOL Europe | DNA Barcoding | 2026-02-19 | ||
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | On the path to reference genomes for all biodiversity: lessons learned and laboratory protocols created in the Sanger Tree of Life core laboratory over the first 2000 species | Caroline Howard , Amy Denton , Benjamin W Jackson , Adam Bates , Jessie Jay , Halyna Yatsenko , Priyanka Sethu Raman , Abitha Thomas , Graeme Oatley , Raquel Vionette do Amaral , Zeynep Ene Göktan , Juan Pablo Narváez Gómez , Isabelle Clayton Lucey , Elizabeth Sinclair , Michael A Quail , Mark Blaxter , Kerstin Howe , Mara K N Lawniczak | Reference Genomes | 2026-02-19 | https://www.biorxiv.org/content/10.1101/2025.04.11.648334v1 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy | Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjorn Grüning, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R Balacco, Mark J P Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O’Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W Williams, Robert M Waterhouse, Adam M Phillippy, Erich D Jarvis, Michael C Schatz, Anton Nekrutenko, Giulio Formenti | Reference Genomes | 2026-02-19 | https://pmc.ncbi.nlm.nih.gov/articles/PMC11462542/ | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Genome Annotation and Other Post-Assembly Workflows for the Tree of Life | Tom Brown, Kathleen A. Collier, Fernando Cruz, Anestis Gkanogiannis, Sagane Joye-Dind, Yannis Nevers, Stepan Saenko, Tyler Alioto, Anthony Bretaudeau, Michael Charleston, Phuong Duy Doan, Christoph Hahn, Thomas W. Harrop, Katie E Herron, Fredrick Kebaso, Romane Libouban, Locedi Mansueto, Shivakumara Manu, Asime Oba, David Swarbreck, Anna Syme, Fabio Zanarello, Jean-Marc Aury, Jèssica Gómez-Garrido, Alice B. Dennis | Genome Annotation | 2026-02-19 | https://osf.io/preprints/biohackrxiv/fy49g_v1 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses | Ali Hakimzadeh, Alejandro Abdala Asbun, Davide Albanese, Maria Bernard, Dominik Buchner, Benjamin Callahan, J. Gregory Caporaso, Emily Curd, Christophe Djemiel, Mikael Brandström Durling, Vasco Elbrecht, Zachary Gold, Hyun S. Gweon, Mehrdad Hajibabaei, Falk Hildebrand, Vladimir Mikryukov, Eric Normandeau, Ezgi Özkurt, Jonathan M. Palmer, Géraldine Pascal, Teresita M. Porter, Daniel Straub, Martti Vasar, Tomáš Větrovský, Haris Zafeiropoulos, Sten Anslan | DNA Barcoding | 2026-02-19 | https://zenodo.org/records/18219794 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | A Snakemake Toolkit for the Batch Assembly, Annotation and Phylogenetic Analysis of Mitochondrial Genomes and Ribosomal Genes From Genome Skims of Museum Collections | Oliver White, Andie Hall, Ben Price, Suzanne Williams, Matthew Clark | DNA Barcoding | 2026-02-19 | https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.14036 | |
| Sampling | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | BGE-ERGA Sample collection and Submission Standard Operating Procedure for non-partner sample providers | Rita Monteiro; Astric Böhne | Reference Genomes | 2026-02-19 | https://doi.org/10.5281/zenodo.16919684 | |
| Sampling, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | An automated decision-making procedure for ranking and selecting species in biodiversity projects | Torsten H. Struck, Thomas Marcussen, Astrid Böhne, Rosa Fernández, José Melo-Ferreira, Isabelle Florent, Carmela Gissi, Christian Guttry, Jennifer A. Leonard, Seanna McTaggart, Camila Mazzoni, Rita Monteiro, Olga Vinnere Pettersson, João Pimenta, Jaakko Pohjoismäki, Katja Reichel, Andrii Tarieiev, Rebekah A. Oomen | Reference Genomes | 2026-02-19 | https://doi.org/10.21203/rs.3.rs-7957242/v1 | |
| Application | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Population Genomics Sample Metadata for the BGE Project - Standard Operating Procedure | João Pedro Marques; Jose Melo-Ferreira; Maria J. Ruiz-López; Leif Andersson; Angelica Crottini; Jennifer A. Leonard; Olga Vinnere Petterson; Seanna McTaggert; Ann McCartney; Luísa Marins; Torsten Struck; Martin Husemann; Carmela Gissi; Isabelle Florent; Katja Reichel; Seanna McTaggart; Felix Shaw; Joana Pauperio; Josephine Burgin; Rita Monteiro; Astrid Böhne; João Pimenta | Reference Genomes | 2026-02-19 | https://doi.org/10.5281/zenodo.10789692 | |
| Application | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | SOP for BGE BioGenomeApp network | João Pimenta; João Pedro Marques; Marco Sollitto; Christian de Guttry; Robert Waterhouse; Camilla Mazzoni; Mónica Moura; Angelica Crottini; Elena Buzan; José Melo-Ferreira | Reference Genomes | 2026-02-19 | https://doi.org/10.5281/zenodo.10789532 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | First record of non-native polychaetes Polydora websteri and P. caeca invading cultured and wild populations of mussels and oysters in the Mediterranean | Barbara Mikac, Vasily I. Radashevsky, Eugenio Fossi, Victoria V. Pankova, Marina Antonia Colangelo, Giuseppe Prioli, Marco Abbiati, Federica Costantini | DNA Barcoding | 2026-02-19 | https://www.sciencedirect.com/science/article/pii/S2352513425000997?via%3Dihub | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Occurrence of the eastern mosquitofish Gambusia holbrooki Girard, 1859 (Poeciliidae, Cyprinodontiformes) in the Madeira Archipelago (NE Atlantic) | Inês Órfão, Luís P. da Silva, Dinis Girão, Pedro Raposeiro, José Jesus, Manuel Biscoito, João Canning-Clode, Filipe Ribeiro, Sónia Ferreira | DNA Barcoding | 2026-02-19 | https://www.reabic.net/journals/bir/2025/3/BIR_2025_Orfao_etal.pdf | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Molecular phylogeny reveals a new species of the Hygrobates longipalpis complex from Portugal (Acariformes, Hydrachnidia, Hygrobatidae) | Vladimir Pešić, Ekatarina S. Konopleva, Dinis Girão, Chiara Vergata, Luís Guilherme Sousa, Sónia Ferreira | DNA Barcoding | 2026-02-19 | https://www.biotaxa.org/em/article/view/88189 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Extensive DNA Barcoding of Lepidoptera of Crete (Greece) Reveals Significant Taxonomic and Faunistic Gaps and Supports the First Comprehensive Checklist of the Island’s Fauna | Peter Huemer, Kai Berggren, Leif Aarvik, Erwin Rennwald, Axel Hausmann, Andreas Segerer, Giorgia Staffoni, Aina Mærk Aspaas, Apostolos Trichas, Paul Hebert. | DNA Barcoding | 2026-02-19 | https://www.mdpi.com/2075-4450/16/5/438 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese moths | Sónia Ferreira, Martin F. V. Corley, João Nunes, Jorge Rosete, Sasha Vasconcelos, Vanessa A. Mata, Joana Veríssimo, Teresa L Silva, Pedro Sousa, Rui Andrade, José Manuel Grosso-Silva, Catarina J. Pinho, Cátia Chaves, Filipa MS Martins, Joana Pinto, Pamela Puppo, Antonio Muñoz-Mérida, John Archer, Joana Pauperio, Pedro Beja | DNA Barcoding | 2026-02-19 | https://bdj.pensoft.net/article/117169/ | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | The InBIO Barcoding Initiative Database: DNA barcodes of Orthoptera from Portugal | Sílvia Pina, Joana Pauperio, Francisco Barros, Cátia Chaves, Filipa MS Martins, Joana Pinto, Joana Veríssimo, Vanessa A Mata, Pedro Beja, Sónia Ferreira | DNA Barcoding | 2026-02-19 | https://bdj.pensoft.net/article/118010/ | |
| Sampling, Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | From Permits to Samples: Addressing Key Challenges for High-Quality Reference Genome Generation in Europe | Katja Reichel, Jaakko Pohjoismäki, Jonas J. Astrin, Astrid Böhne, Chiara Bortoluzzi, Elena Bužan, Javier del Campo, Claudio Ciofi, Camilla B. Di-Nizo, Pradeep K. Divakar, Carola Greve, Vladimír Hampl, Leon Hilgers, Veronika N. Laine, Jennifer A. Leonard, Jesus Lozano-Fernandez, Lada Lukić Bilela, Camila J. Mazzoni, Ann M. McCartney, José Melo-Ferreira, Rita Monteiro, Rebekah A. Oomen, Martina Pavlek, João Pimenta, Michal Rindos, Ole Seehausen, Andrii Tarieiev, Salvatore Tomasello, Olga Vinnere Pettersson, Robert M. Waterhouse, Alexandra A.-T. Weber, Oleksandr Zinenko, Christian de Guttry | Genome Sequencing | 2026-02-19 | https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.70100 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Monitoring of the Balkan chamois (Rupicapra rupicapra balcanica) populations in the territory of the Republic of Srpska | Dragan Gačić et al | Balkans | 2026-02-19 | https://open-research-europe.ec.europa.eu/collections/bge | |
| Application | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Definition of Case Study Teams for the ERGA stream within the BGE Project | Jose Melo-Ferreira; João Pimenta; João Pedro Marques | ERGA | 2026-02-19 | https://doi.org/10.5281/zenodo.10789650 | |
| Sampling, Sequencing | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | The BGE guide to using WorkflowHub | Stian Soiland-Reyes | DNA Barcoding | 2026-02-19 | https://doi.org/10.48546/workflowhub.sop.15.1 | |
| Application | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Under pressure: the Critically Endangered common hamster in Hungary reached an all-time demographic low in 2024 | Lajos Szatmári, Gábor Sramkó, Virág Nyíri, Tamás Cserkész | Genome Sequencing | 2026-02-19 | https://www.cambridge.org/core/journals/oryx/article/under-pressure-the-critically-endangered-common-hamster-in-hungary-reached-an-alltime-demographic-low-in-2024/8CB226BE5F06EF4B273DFC515CC0222A | |
| Sampling | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Pollinator Intraspecific Genetic Diversity Substream - Standard Operating Procedure | João Pimenta; Sónia Ferreira; José Melo-Ferreira; Robert Waterhouse | Pollinators | 2026-02-19 | https://zenodo.org/records/10869794 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflow for library building - NEB low volume version | Stacey Dubbeldam | DNA Barcoding | 2026-02-19 | https://www.protocols.io/view/nebnext-ultra-ii-library-prep-for-illumina-low-vol-j8nlko6b1v5r/v1 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflow for library building - full volume Santa Cruz Reaction for museum specimens | Alyssa Paul; Carla Gustave; Owain Powell; Ben Price | DNA Barcoding | 2026-02-19 | https://doi.org/10.48546/workflowhub.sop.20.1 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflow for high throughput DNA extraction from historical specimens in collections | Andie Hall; Owain Powell; Piotr Cuber; Ben Price | DNA Barcoding | 2026-02-19 | https://dx.doi.org/10.17504/protocols.io.4r3l27ebxg1y/v2 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflow for DNA barcoding fresh invertebrates - COI and PacBio | Alessio Iannucci; Samantha Rossini | DNA Barcoding | 2026-02-19 | https://doi.org/10.48546/workflowhub.sop.21.1 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflow for library building - half volume Santa Cruz Reaction for museum specimens | Ben Price; Owain Powell; Alyssa Paul; Carla Gustave; Jordan Beasley | DNA Barcoding | 2026-02-19 | https://doi.org/10.48546/workflowhub.sop.22.1 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | SOP for DNA extraction from formalin preserved tissue | Stacey Dubbeldam; Elza Duijm | DNA Barcoding | 2026-02-19 | https://doi.org/10.48546/workflowhub.sop.25.1 | |
| Sampling | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | SOP for museum specimen tissue sampling | Ben Price; Paul Hebert; International Barcode of Life | DNA Barcoding | 2026-02-19 | https://doi.org/10.48546/workflowhub.sop.24.1 | |
| Sampling, Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | SOP - sampling water eDNA sampling - Citizen Scientists | BGE Consortium | DNA Barcoding | 2026-02-19 | https://youtu.be/N9_K36hbp0Y?si=7rJaphhENYamCmHj | |
| Sampling | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Unveiling Water Mite Diversity In Portugal: A prelude to species discovery | Dinis Girão, Sónia Ferreira | DNA Barcoding | 2026-02-19 | https://www.researchgate.net/publication/385885717_Unveiling_Water_Mite_Diversity_In_Portugal_A_prelude_to_species_discovery?channel=doi&linkId=6739229968de5e5a3078f127&showFulltext=true | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Swedish Earth Biogenome Project Genome Assembly Workflow | Mahesh Binzer-Panchal, Martin Pippel | assembly | 2026-02-19 | https://workflowhub.eu/workflows/1106 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Pipeline GALOP for long-read assembly workflow at Genoscope | Benjamin Istace, Jean-Marc Aury, Caroline Belser | assembly | 2026-02-19 | https://workflowhub.eu/workflows/1200?version=2 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflow for de novo genome assembly at CNAG | Jessica Gomez-Garrido | assembly | 2026-02-19 | https://workflowhub.eu/workflows/567?version=2 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflows for de-novo genome assembly in Galaxy - Flye-Hypo | Diego De Panis | assembly | 2026-02-19 | https://workflowhub.eu/collections/18 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflows for de-novo genome assembly in Galaxy - NextDenovo-HyPo | Diego De Panis | Genome Sequencing | 2026-02-19 | https://workflowhub.eu/collections/17 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflows for de-novo genome assembly in Galaxy - Hifiasm-HiC | Tom Brown, Diego De Panis | assembly | 2026-02-19 | https://workflowhub.eu/collections/10 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflows for de-novo genome assembly in Galaxy - Hifiasm-solo | Diego De Panis | assembly | 2026-02-19 | https://workflowhub.eu/collections/27 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Introductory HiC Course | Morten Skage, Irene Fabiola Roman Maldonado, Karine Labadie, Lorenzo Ballini, Simona Buonanno, Fernando Cruz Rodriguez, Annunziata De Luisi, Leonardo Girlanda, Graeme Oatley, Ave Tooming-Klunderud, Olga Vinnere Pettersson | Genome Sequencing | 2026-02-19 | https://scilifelab-training.github.io/BGE-HiC-course/module1.html | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | EARs - The ERGA Assembly Reports repository | ERGA Community | ERGA | 2026-02-19 | https://github.com/eRGA-consortium/eARs/ | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipeline to evaluate the quality of genomic annotations - AnnoAudit | Phuong Doan | Pipelines | 2026-02-19 | https://doi.org/10.48546/workflowhub.workflow.1330.1 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Biodiversity Genomics Europe and SciLifeLab Challenging Samples Hi-C Course Stream | Ferrari, Giada; Veneziano Broccia, Pamela; Lundbäck-Larva, Tuuli; Kilburn, Brian; Vinnere Pettersson, Olga; Tooming-Klunderud, Ave | Genome Sequencing | 2026-02-19 | https://zenodo.org/records/16812210 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipeline for the generation of files for visualisation of HiC contact maps | Tom Brown | Pipelines | 2026-02-19 | https://doi.org/10.48546/workflowhub.workflow.795.2 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | ANNOTATO - ERGA Genome Annotation Workflow in Nextflow | Phuong Doan | Genome Annotation | 2026-02-19 | https://doi.org/10.48546/workflowhub.workflow.654.2 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Workflow for validating taxonomic identifiers, retrieving metadata, and generating ENA taxonomy request files | Dan Parsons; Maria Kamouyiaros; Ben Price | ENA database | 2026-02-19 | https://github.com/bge-barcoding/ena-taxid-creation | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Batch submission of barcodes to BOLDigger2 for searching the BOLD database | Dan Parsons | BOLD | 2026-02-19 | https://github.com/bge-barcoding/BOLDigger2_batch | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts for processing and parsing BOLD-downloaded sample metadata | Benjamin Price, Dan Parsons | BOLD | 2026-02-19 | https://github.com/bge-barcoding/sample-processing | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts for cleaning and analyzing FASTA sequence alignments | Benjamin Price, Dan Parsons | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/fasta-cleaner | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Biodiversity Genomics Europe and SciLifeLab Introductory Hi-C Course Stream | Skage, M., Roman Maldonado, I. F., Labadie, K., Ballini, L., Buonanno, S., Cruz Rodriguez, F., Deluisi, A., Girlanda, L., Oatley, G., Tooming-Klunderud, A., Vinnere Pettersson, O. | Genome Sequencing | 2026-02-19 | https://zenodo.org/records/16811296 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts and files to facilitate mapping between different data standards relevant BGE | Rutger Vos; Vishnukumar Balavenkataraman Kadhirvelu; Sharif Islam | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/StayingMapped | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Biodiversity Genomics Europe and SciLifeLab AssemblyLink Hi-C Course Stream | Shiue, Lily; Aguilera, Laura; Bertrand, Laurie; Eunkyoung, Choi; Gissi, Carmela; Gyftea, Maria; Tooming-Klunderud, Ave; Vinnere Pettersson, Olga | Genome Sequencing | 2026-02-19 | https://zenodo.org/records/16926088 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Workflow to extract mitochondrial protein-coding genes from NGS libraries - MitoGeneExtractor | Dan Parsons; Marie Brasseur; Christoph Mayer | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/MitoGeneExtractor-BGE | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Online NGS equimolar pooling calculator | Benjamin Price | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/ngs-equimolar-pooling-calculator | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts for semi-automated submission of trimmed reads to ENA | Dan Parsons | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/ena-submission | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Script for analysing DNA barcode sequences from multiple FASTA files | Benjamin Price, Dan Parsons | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/fasta_compare | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Dashboard for visualisation, filtering, and downloading barcode sequences and statistics from BeeGees | Dan Parsons | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/barcode_viewer | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts for validating DNA barcode sequences through structural and taxonomic validation | Rutger Vos | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/barcode_validator | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Workflows for processing, validating, and analyzing genome skimming data | Rutger Vos; Dan Parsons; Dick Groenenberg; Luka Lmelias | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/bge-skimming-analytics | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipeline for processing and curating BOLD reference sequence data | Rutger Vos; Ben Price; Fabian Deister; Stephan Kuehbandner | curation | 2026-02-19 | https://github.com/bge-barcoding/bold-library-curation | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scrtips for high-throughput retrieval of sequences from NCBI GenBank - Gene Fetch | Dan Parsons; Ben Price | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/gene_fetch | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts to manipulate BOLD data into other formats for downstream processing | Dan Parsons; Ben Price | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/bold-data-fun | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Workflow for recovering barcode sequences from genome skim - BeeGees | Dan Parsons | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/BeeGees | |
| Sampling, Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts to aggregate barcode sample metadata to update iBOL Europe's gap list | Rutger Vos, Naome van Es; Pierre-Etienne Cholley | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/ibol-europe-gaplist-app | |
| Sampling, Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipeline and files for processing taxonomic information and synonyms | Rutger Vos; Fabian Deister; Ben Price | DNA Barcoding | 2026-02-19 | https://github.com/bge-barcoding/gaplist-data | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | BGE iBOL DNA barcode library curation tool | Fabian Deister, Stephan Kuehbandner | curation | 2026-02-19 | https://github.com/bge-barcoding/BGE_library_curation_tool | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | iBOL Europe BOLD curation datasets | BGE Consortium | DNA Barcoding | 2026-02-19 | https://bge-barcoding.github.io/manual-curation/ | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | BGA24: Introduction to Manual Curation | Biodiversity Genomics Academy | curation | 2026-02-18 | https://www.youtube.com/live/qlWZlFXy07w | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflows for generating results for ERGA-BGE Reports | Diego De Panis | Genome Sequencing | 2026-02-18 | https://workflowhub.eu/collections/24 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Galaxy for Genome Annotation | Galaxy | Genome Annotation | 2026-02-18 | https://annotation.usegalaxy.eu/ | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Welcome to Galaxy for Genome Assembly | Galaxy | Genome Assembly | 2026-02-18 | https://assembly.usegalaxy.eu/ | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Overview of the Ensembl integration of the BRAKER2 annotation pipeline | Ensembl | Genome Annotation | 2026-02-18 | https://beta.ensembl.org/help/articles/braker-2-genome-annotation | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Overview of the Ensembl non-vertebrate automated annotation system | Ensembl | Genome Annotation | 2026-02-18 | https://beta.ensembl.org/help/articles/non-vertebrate-genome-annotation | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Overview of the Ensembl vertebrate automated annotation system | Ensembl | Genome Annotation | 2026-02-18 | https://beta.ensembl.org/help/articles/vertebrate-genome-annotation | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Welcome to the ERGA Genome Tracking Console | ERGA Community | Genome Sequencing | 2026-02-18 | https://genomes.cnag.cat/erga-stream/ | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Rapid genome curation training package (GRIT + Pretext) | Jo Wood | Genome Sequencing | 2026-02-18 | https://gitlab.com/wtsi-grit/rapid-curation | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | SOP for genome size estimations from collection specimens | Jean François Flot, Mohammed Tawfeeq, Ana Riesgo | Genome Sequencing | 2026-02-18 | https://www.protocols.io/view/sop-for-genome-size-estimations-from-collection-sp-yxmvm3by9l3p/v1 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | SOP: cell culture methods for non-model organisms | Ana Riesgo, María Conejero, C.DiNizo, Jonas Astrin, Cira Martínez, Tomàs arqués | Genome Sequencing | 2026-02-18 | https://www.protocols.io/view/sop-cell-culture-methods-for-non-model-organisms-n92ldm6q7l5b/v1 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Standard Operating Procedure for karyotyping non-model organisms | Ana Riesgo, María Conejero, Jonas Astrin, Cira Martínez, Tomás arqués-Bonet, Camilla Di Nizo | Genome Sequencing | 2026-02-18 | https://www.protocols.io/view/standard-operating-procedure-for-karyotyping-non-m-14egn3r9pl5d/v1 | |
| Sampling | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | BGE-ERGA Sample collection and Submission Standard Operating Procedure for the Hotspots team | Monteiro, Rita; Böhne, Astrid | Genome Sequencing | 2026-02-18 | https://zenodo.org/records/16917612 | |
| Sampling | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | BGE-ERGA Sample Collection and Submission Standard Operating Procedure for Bioblitz funded projects | Monteiro, Rita; Böhne, Astrid | Genome Sequencing | 2026-02-18 | https://zenodo.org/records/16919575 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Tool and Database files for the manual curation of BOLD records | Ben Price; Stephan Kuehbandner | DNA Barcoding | 2026-02-16 | https://github.com/bge-barcoding/manual-curation | |
| Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | BOLD5 platform supporting the DNA barcoding data pathway | BGE Consortium | DNA Barcoding | 2026-02-16 | https://boldsystems.org/ | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA BGE Project Genome Data and Assemblies | ERGA Community | ERGA | 2026-02-16 | https://www.ncbi.nlm.nih.gov/datasets/genome/?bioproject=PRJEB61747 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA Data Portal | ERGA Community | ERGA | 2026-02-16 | https://portal.erga-biodiversity.eu/ | |
| Sampling, Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | BGE BOLD data overview: museum sampling | BGE Consortium | DNA Barcoding | 2026-02-16 | http://doi.org/10.5883/DS-BGEMS | |
| Sampling, Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | BGE BOLD data overview: fresh material from aquatic sampling | BGE Consortium | DNA Barcoding | 2026-02-16 | http://doi.org/10.5883/DS-BGEAS | |
| Sampling, Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | BGE BOLD data overview: fresh material from terrestrial sampling | BGE Consortium | DNA Barcoding | 2026-02-16 | https://doi.org/10.5883/DS-BGEFM | |
| Sampling, Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | List of BGE museum samples | Benjamin Price | DNA Barcoding | 2026-02-16 | https://doi.org/10.5281/zenodo.15758522 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | Curated European animal data from the BOLD public dataset version 17-Oct-2025 | Benjamin Price; Fabian Deister; Rutger Vos | DNA Barcoding | 2026-02-16 | https://doi.org/10.5281/zenodo.17472152 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | Curated European animal data from the BOLD public dataset version 15-Aug-2025 | Benjamin Price; Fabian Deister; Rutger Vos | DNA Barcoding | 2026-02-16 | https://doi.org/10.5281/zenodo.17467308 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | Curated European animal data from the BOLD public dataset version 13-Jun-2025 | Benjamin Price; Fabian Deister; Rutger Vos | DNA Barcoding | 2026-02-16 | https://doi.org/10.5281/zenodo.15864848 | |
| Sampling, Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE reference genome of Gambusia holbrooki, a globally invasive freshwater fish | Bonnie Fraser, Clelia Gasparini, Francesco Santi, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah A. Oomen, Torsten H. Struck, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, Amy Denton, Caroline Howard, Kerstin Howe, Mark Blaxter, Shane McCarthy, Jonathan M.D. Wood, Fergal Martin, Swati Sinha, Leanne Haggerty, Chiara Bortoluzzi | Reference Genomes | 2026-02-16 | https://open-research-europe.ec.europa.eu/articles/6-48/v1?utm_medium=email&utm_source=etoc_alert_WEEKLY | |
| Sampling, Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE Genomes of Culex laticinctus, Culex modestus, Culex perexiguus, and Culex theileri: Unveiling the Genomes of the Key Vectors of West Nile Virus in the Mediterranean Basin | María José Ruiz-López, Sonia Cebrián-Camisón, Iker Irisarri, Sergio Magallanes, Josué Martínez-de la Puente, Jordi Figuerola, Robert M Waterhouse, Wellcome Sanger Institute Tree of Life Management: Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, Leanne Haggerty, Fergal Martin, Tom Brown | Reference Genomes | 2026-02-10 | https://academic.oup.com/gbe/article/18/2/evaf245/8454596?login=false | ||
| Sequencing, Data | Knowledge Platform | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | Open Access ERGA-BGE reference genome of Carlina diae, an endemic spineless thistle of Crete, Greece | Eleftheria Antaloudaki, Danae Karakasi, Manos Stratakis, Eleftherios Bitzilekis, Petros Lymberakis, Nikolaos Poulakakis, Tereza Manousaki, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Fergal Martin, Vianey Paola Barrera Enriquez, Leanne Haggerty, Chiara Bortoluzzi | Reference Genomes | 2026-02-04 | https://open-research-europe.ec.europa.eu/articles/6-34/v1 | |
| Sequencing, Data | Genome Sequencing, Knowledge Platform | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE Genome of Ailoscolex lacteospumosus Bouché, 1969 – the enigmatic milky worm endemic to the Pyrenees | Marta Novo, Daniel Fernández Marchán, Sylvain Gérard, Alejandro Martínez Navarro, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten H Struck, Rebekah A Oomen, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Tyler Alioto, Anna Lazar, Leanne Haggerty, Fergal Martin, Tom Brown | Reference Genomes | 2026-01-29 | https://open-research-europe.ec.europa.eu/articles/6-26 | |
| Sequencing, Data | Genome Sequencing, Knowledge Platform | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Albinaria teres (Olivier, 1801): a rock-dwelling land snail endemic to the island of Crete, Greece | Danae Karakasi, Katerina Vardinoyannis, Giannis Bolanakis, Eleftherios Bitzilekis, Manos Stratakis, Petros Lymberakis, Nikolaos Poulakakis, Rita Monteiro, Astrid Böhne, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Adama N’dar, Francesca Floriana Tricomi, Leanne Haggerty, Fergal Martin, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Tom Brown | Reference Genomes | 2026-01-28 | https://open-research-europe.ec.europa.eu/articles/6-25 | |
| Sampling, Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | From Permits to Samples: Addressing Key Challenges for High-Quality Reference Genome Generation in Europe | Katja Reichel, Jaakko Pohjoismäki, Jonas J. Astrin, Astrid Böhne, Chiara Bortoluzzi, Elena Bužan, Javier del Campo, Claudio Ciofi, Camilla B. Di-Nizo, Pradeep K. Divakar, Carola Greve, Vladimír Hampl, Leon Hilgers, Veronika N. Laine, Jennifer A. Leonard, Jesus Lozano-Fernandez, Lada Lukić Bilela, Camila J. Mazzoni, Ann M. McCartney, José Melo-Ferreira, Rita Monteiro, Rebekah A. Oomen, Martina Pavlek, João Pimenta, Michal Rindos, Ole Seehausen, Andrii Tarieiev, Salvatore Tomasello, Olga Vinnere Pettersson, Robert M. Waterhouse, Alexandra A.-T. Weber, Oleksandr Zinenko, Christian de Guttry | Reference Genomes | 2026-01-21 | https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.70100 | |
| Sequencing, Data | Genome Sequencing, Knowledge Platform | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE reference genome of Hirudo verbana, a once neglected freshwater haematophagous European medicinal leech | Alejandro Manzano-Marín, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, Caroline Howard, Kerstin Howe, Mark Blaxter, Shane McCarthy, Jonathan M.D. Wood, Fergal Martin, Anna Lazar, Leanne Haggerty, Chiara Bortoluzzi | Reference Genomes | 2026-01-13 | https://open-research-europe.ec.europa.eu/articles/5-395 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Molecular phylogeny reveals a new species of the Hygrobates longipalpis complex from Portugal (Acariformes, Hydrachnidia, Hygrobatidae) | Vladimir Pešić, Ekaerina S. Konopleva, Dinis Girão, Chiara Vergata, Luís Guilherme Sousa, Sónia Ferreira | DNA Barcoding | 2026-01-12 | https://www.biotaxa.org/em/article/view/88189/82914 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Gene Fetch | Dan Parsons, Ben Price | Genome Sequencing | 2026-01-08 | https://workflowhub.eu/workflows/1342 | |
| Sampling, Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | Open Access ERGA-BGE reference genome of Lewinskya acuminata, a common epiphytic Mediterranean moss with disjunct populations in California and Ethiopia | Pablo Aguado-Ramsay, Francisco Lara, Isabel Draper, Maria Conejero, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Genomescope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi | Reference Genomes | 2025-12-08 | https://open-research-europe.ec.europa.eu/articles/5-357 | |
| Sampling, Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Xanthium orientale subsp. italicum (Moretti) Greuter. A plant of American origin, now widespread and, in some cases, invasive in Europe | Salvatore Tomasello, Eleonora Manzo, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten H Struck, Rebekah A Oomen, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Adama N’dar, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Vianey Paola Barrera Enriquez, Leanne Haggerty, Fergal Martin, Tom Brown | Reference Genomes | 2025-12-02 | https://open-research-europe.ec.europa.eu/articles/5-367/v1?utm_medium=email&utm_source=etoc_alert_WEEKLY | |
| Sampling, Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE reference genome of Leviellus thorelli, a common orb-weaving spider representing the Zygiellidae family | Matjaz Gregorič, Elena Bužan, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi | Reference Genomes | 2025-12-02 | https://open-research-europe.ec.europa.eu/articles/5-365 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Benchmarking metabarcode sequence denoisers for improved invertebrate community diversity estimates | Marius Hannes Eisele, Brendan Furneaux, Tomas Roslin, Otso Ovaskainen, Brent C. Emerson, Carmelo Andújar | DNA Barcoding | 2025-12-02 | https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.70159 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Dailognatha quadricollis, an East Mediterranean darkling beetle | Giannis Bolanakis, Danae Karakasi, Eleftherios Bitzilekis, Manos Stratakis, Apostolos Trichas, Petros Lymberakis, Nikos Poulakakis, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi | Reference Genomes | 2025-12-01 | https://open-research-europe.ec.europa.eu/articles/5-225/v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Patella rustica Linnaeus, 1758: a resource to investigate responses to global warming in the intertidal | Rui Faria, Rocío Nieto Vilela, Fernando P Lima, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten H Struck, Rebekah A Oomen, Marta Gut, Laura Aguilera, Tyler Alioto, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Anna Lazar, Leanne Haggerty, Fergal Martin, Tom Brown | Reference Genomes | 2025-11-12 | https://open-research-europe.ec.europa.eu/articles/5-350/v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE reference genome of the lineid heteronemertean Lineus lacteus (Pilidiophora, Nemertea) | Aida Verdes, Patricia Alvarez-Campos, María Conejero, Ana Riesgo, Astrid Böhne, Rita Monteiro, Javier Palma-Guerrero, Rosa Fernández, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi | Reference Genomes | 2025-11-06 | https://open-research-europe.ec.europa.eu/articles/5-317 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Eunicella cavolini | Didier Aurelle, Dorian Guillemain, Frédéric Zuberer, Denys Malengros, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Caroline Belser, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi | Reference Genomes | 2025-11-05 | https://open-research-europe.ec.europa.eu/articles/5-323 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Harmonising genomics research excellence and stakeholder needs in conservation management | Reference Genomes | 2025-11-04 | https://biodiversitygenomics.eu/2025/11/03/new-paper-harmonising-genomics-research-excellence-and-stakeholder-needs-in-conservation-management/ | ||
| Sampling, Sequencing, Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | The Role of Community Science in DNA-Based Biodiversity Monitoring | Carolina Corrales, Karolina Bacela-Spychalska, Elena Buzan, Torbjørn Ekrem, Sónia Ferreira, William Goodall-Copestake, Elaine van Ommen Kloeke, Peter M. Hollingsworth, Sarah J. Bourlat | DNA Barcoding | 2025-11-04 | https://onlinelibrary.wiley.com/doi/10.1111/mec.70100 | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | A new species of Torrenticola ungeri complex (Acari, Hydrachnidia, Torrenticolidae), and new water mite records for Portugal | Vladimir Pesic, Dinis Girao, Chiara Vergata, Luis P. Da Silva, Sonia Ferreira | New species | 2025-11-04 | https://www.mapress.com/zt/article/view/zootaxa.5717.1.1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Holothuria sanctori | Katerina Vasileiadou, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Tereza Manousaki, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Adama Ndar, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Chiara Bortoluzzi | Reference Genomes | 2025-10-23 | https://open-research-europe.ec.europa.eu/articles/5-297/v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Pipistrellus hanaki | Panagiotis Georgakakis, Danae Karakasi, Petros Lymberakis, Manolis Papadimitrakis, Manos Stratakis, Eleftherios Bitzilekis, Nikolaos Poulakakis, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Sophie Mangenot, Caroline Belser, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, Chiara Bortoluzzi | Reference Genomes | 2025-10-23 | https://open-research-europe.ec.europa.eu/articles/5-298/v1 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Gene Fetch: A Python tool for sequence retrieval from GenBank across the tree of life | Daniel A. J. Parsons, Benjamin Price | DNA Barcoding | 2025-08-25 | https://joss.theoj.org/papers/10.21105/joss.08456 | |
| Sequencing | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | HiC Course Handbook | Olga Vinnere Pettersson, Ave Tooming-Klunderud, Morten Skage, Irene Fabiola Roman, Karine Labadie, Lily Shiue, Brian Kilburn. | Reference Genomes | 2025-08-25 | https://drive.google.com/file/d/12-uGIIFkQAsp5o3JVXk8x9AQWoiin6Pk/view | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Natrix maura | Salvador Carranza, Daniel Fernández-Guiberteau, Laura Blasón, Sergi Tulloch, Rita Monteiro, Astrid Böhne, Rosa Fernández, Nuria Escudero, Laura Aguilera, Marta Gut, Tyler S Alioto, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Swati Sinha, Leanne Haggerty, Fergal Martin, Tom Brown | Reference Genomes | 2025-08-20 | https://open-research-europe.ec.europa.eu/articles/5-215 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Tarphius canariensis | Brent C Emerson, María Conejero, Ana Riesgo, Víctor Noguerales, Rita Monteiri, Astrid Böhne, Javier Palma Guerrero, Rosa Fernández, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics team, Leanne Haggerty, Fergal Martin, Tom Brown | Reference Genomes | 2025-08-19 | https://open-research-europe.ec.europa.eu/articles/5-219/v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Phyllidia flava | Carles Galià-Camps, Miquel Pontes, Thomas Marcussen, Torsten H. Struck, Rebekah Oomen, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Diego De Panis | Reference Genomes | 2025-08-07 | https://www.biorxiv.org/content/10.1101/2025.01.14.632929v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Malpolon monspessulanus | Salvador Carranza, Daniel Fernández-Guiberteau, Laura Blasón, Javier Palma-Guerrero, Rosa Fernández, Rita Monteiro, Astrid Böhne, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler Alioto, Leanne Haggerty, Swati Sinha, Fergal Martin, Diego De Panis | Reference Genomes | 2025-08-07 | https://preprints.arphahub.com/article/155085/ | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Gluvia dorsalis | Jesus Lozano-Fernandez, Marc Domènech, Attila Ibos, Thomas Marcussen, Torsten H. Struck, Rebekah Oomen, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Diego De Panis | Reference Genomes | 2025-08-07 | https://www.biorxiv.org/content/10.1101/2024.12.02.626363v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Apodemus agrarius | Franc Janžekovič, Elena Buzan, Aja Bončina, Nuria Escudero, Rosa Fernández, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Leanne Haggerty, Fergal Martin, Diego De Panis | Reference Genomes | 2025-08-07 | https://www.biorxiv.org/content/10.1101/2024.12.04.626796v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Acomys minous | Petros Lymberakis, Danae Karakasi, Manolis Papadimitrakis, Rita Monteiro, Astrid Böhne, Rosa Fernández, Nuria Escudero, Jean-Marc Aury, Alice Moussy, Corinne Cruaud, Karine Labadie, Sophie Mangenot, Caroline Belser, Lola Demirdjian, Swati Sinha, Leanne Haggerty, Fergal Martin, Patrick Wincker, Pedro H. Oliveira, Tom Brown | Reference Genomes | 2025-08-07 | https://preprints.arphahub.com/article/153920/ | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Pyrrhula murina | Ricardo Jorge Lopes, Astrid Böhne, Thomas Marcussen, Rebekah A. Oomen, Torsten Hugo Struck, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Rita Monteiro | Reference Genomes | 2025-08-07 | https://open-research-europe.ec.europa.eu/articles/5-210/v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Anisus vorticulus | Bernhard Hausdorf, Elicio Tapia, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten Struck, Rebekah A Oomen, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics team, Leanne Haggerty, Fergal Martin, Thomas Brown | Reference Genomes | 2025-07-25 | https://open-research-europe.ec.europa.eu/articles/5-190 | |
| Sampling, Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Biodiversity Genomics Research Practices Require Harmonising to Meet Stakeholder Needs in Conservation | Elena Buzan, Christian de Guttry, Chiara Bortoluzzi, Nathaniel R. Street, Kay Lucek, Anna Rosling, Lino Ometto, Alice Mouton, Luísa S. Marins, María José Ruiz-López, José Melo-Ferreira, Elisabet Ottosson, Camila J. Mazzoni, and Robert M. Waterhouse | Reference Genomes | 2025-07-07 | https://onlinelibrary.wiley.com/doi/10.1111/mec.70001 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Dendarus foraminosus: an IUCN Least Concern darkling beetle endemic to Crete (Greece) | Giannis Bolanakis, Danae Karakasi, Apostolos Trichas, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Eleftherios Bitzilekis, Manos Stratakis, Petros Lymberakis, Nikolaos Poulakakis, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Simone Duprat, Emilie Téodori, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, and Chiara Bortoluzzi | Reference Genomes | 2025-07-07 | https://doi.org/10.12688/openreseurope.20489.1 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Extensive DNA Barcoding of Lepidoptera of Crete (Greece) Reveals Significant Taxonomic and Faunistic Gaps and Supports the First Comprehensive Checklist of the Island’s Fauna | Peter Huemer, Kai Berggren, Leif Aarvik, Erwin Rennwald, Axel Hausmann, Andreas Segerer, Giorgia Staffoni, Aina Mærk Aspaas, Apostolos Trichas, Paul D. N. Hebert | New species | 2025-05-26 | https://doi.org/10.3390/insects16050438 | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/spotlight.png | Spotlight on Metabarcoding methods | BGE Consortium | eDNA | 2025-05-26 | https://drive.google.com/file/d/1FgTnIpSt0Svn4LAIxBbGrZy4KiLC-WtB/view?usp=sharing | |
| Sequencing, Data | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/spotlight.png | Spotlight on Data Repositories | BGE Consortium | ENA database | 2025-05-21 | https://drive.google.com/file/d/15XmApXGz8PqG7b07YABYZ7FfvGTEEV8C/view?usp=sharing | |
| Data, Application | DNA Barcoding | 7663 | Searchable list of DNA barcodes (COI) for animal species in Europe | BGE Consortium | DNA Barcoding | 2025-05-20 | https://species.iboleurope.org/ | |
| Data | DNA Barcoding | 7663 | Multiple DNA barcode (ITS UNITE) datasets for eukaryotes | Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson, Urmas Kõljalg | DNA Barcoding | 2025-05-20 | https://unite.ut.ee/repository.php | |
| Data | DNA Barcoding | 7663 | DNA barcode (COI) database for butterflies in Europe | Leonardo Dapporto | DNA Barcoding | 2025-05-20 | https://github.com/leondap/iodatabase | |
| Sequencing, Data | DNA Barcoding | 7663 | BGE DNA barcodes in BOLD for species in Europe | BGE Consortium | DNA Barcoding | 2025-05-20 | https://bench.boldsystems.org/index.php/MAS_Management_DataConsole?codes=BGE | |
| Sampling | Genome Sequencing | 7663 | Genome sequencing species nomination lists from ERGA | ERGA Community | ERGA | 2025-05-20 | https://docs.google.com/spreadsheets/d/1Bze-5sHTSSMk4Up06zg4XQf52aAtdQGcC5wOThyM7eI/edit?gid=1492253232#gid=1492253232 | |
| Sampling, Data | Genome Sequencing | 7663 | Animal genome sizes based on traditional feulgen measurements | Ana Riesgo, Maria Conejero | Genome size | 2025-05-20 | https://doi.org/10.5281/zenodo.10717906 | |
| Sampling, Data | Genome Sequencing | 7663 | BGE genome sequencing species list with attributes on GoaT | ERGA, Wellcome Sanger Institute | GoaT | 2025-05-20 | http://tinyurl.com/mrsh5a94 | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training-1.png | BGE workflows for metabarcoding from soils, water and malaise traps | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/index.html# | |
| Sequencing, Data | Genome Sequencing | 7663 | BGE genome sequencing tracker on the ERGA data portal | ERGA, EMBL-EBI | ERGA | 2025-05-20 | https://portal.erga-biodiversity.eu/status_tracking?0=ERGA%20BGE&1=phylogenyCurrentClass%20-%20kingdom | |
| Sampling | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Script for BGE genome sequencing species selection | Torsten Struck | ERGA | 2025-05-20 | https://github.com/torstenstruck/BGE_species_priorization | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipeline to remove duplications in genome assemblies with Purge-Dups | Tom Brown | ERGA | 2025-05-20 | https://doi.org/10.48546/workflowhub.workflow.506.2 | |
| Sampling, Data | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/spotlight.png | Spotlight Species Selection | BGE Consortium | New species | 2025-05-20 | https://drive.google.com/file/d/1Z2urv3gWRxg0ZzJnWdBSHoAjInud3340/view?usp=sharing | |
| Node development | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/policy.png | BGE first Policy Brochure | BGE Communications | Policy | 2025-05-20 | https://drive.google.com/file/d/1ZX6_klwHXhkTpExhZQ_7CemVNQbVFIHb/view?usp=sharing | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipeline for genome scaffolding with Hi-C reads using YaHS | Tom Brown | ERGA | 2025-05-20 | https://doi.org/10.48546/workflowhub.workflow.796.2 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipeline for visualising genome Hi-C maps with PretextView and HiGlass | Tom Brown | ERGA | 2025-05-20 | https://doi.org/10.48546/workflowhub.workflow.795.2 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts to facilitate uploading ERGA genome assembly data to ENA | Tyler Alioto, Tom Brown, Diego De Panis | ENA database | 2025-05-20 | https://github.com/ERGA-consortium/ERGA-submission | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Multiple ERGA pipelines for genome assembly and annotation | Diego De Panis, Tom Brown, Phuong Doan, Anestis Gkanogiannis, Jes Gomez | ERGA | 2025-05-20 | https://github.com/ERGA-consortium/pipelines | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Workflow to derive barcode sequences from genome skim data | Dan Parsons | DNA Barcoding | 2025-05-20 | https://workflowhub.eu/workflows/1346 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipelines to assemble and analyse mitochondrial genomes from skim data | Oliver White, Rutger Vos, Eli Chadwick, Dick Groenenberg, Douglas Lowe, Dan Parsons, Ben Price | DNA Barcoding | 2025-05-20 | https://github.com/o-william-white/skim2mito | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts and data to infer very large DNA barcode phylogenies | Rutger Vos | DNA Barcoding | 2025-05-20 | https://workflowhub.eu/workflows/706?version=1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training-1.png | Guidelines covering the major steps for generating a reference genome | Tom Brown, Diego de Panis, Joao Pimenta, Christian de Guttry, Ann Mc Cartney, Rita Monteiro, Javier Palma, Luisa Marins, Astrid Böhne, Robert Waterhouse, Camila Mazzoni | Reference Genomes | 2025-05-20 | https://www.erga-biodiversity.eu/erga-satellite-genomes# | |
| Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | PipeCraft2 pipeline for metabarcoding data analysis | Sten Anslan, Vladimir Mikryukov, Mohammad Bahram, Indrek Hiiesalu, Leho Tedersoo | DNA Barcoding | 2025-05-20 | https://github.com/pipecraft2/pipecraft | |
| Sampling | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | SOP for submission of ERGA metadata | Jennifer A. Leonard, Olga Vinnere Petterson, Seanna McTaggert, Ann McCartney, Luísa Marins, Torsten Struck, Martin Husemann, Carmela Gissi, Isabelle Florent, KatjaReichel, Seanna McTaggart, Felix Shaw, Joana Pauperio, Josephine Burgin, Rita Monteiro, Astrid Böhne, ERGA Consortium | ERGA | 2025-05-20 | ||
| Node development | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | ERGA governance document | Ciara Staunton | ERGA | 2025-05-20 | https://b2drop.eudat.eu/s/xrLHFsBEEBS38Et# | |
| Node development | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | ERGA code of conduct | Chiara Bortoluzzi, Elena Buzan, Christian de Guttry, Diego de Panis, Fabrizio Ghiselli, Giulio Formenti, Jennifer Leonard, Ann Mc Cartney, Merce Montoliu, Alice Mouton, Sadye Paez, Robert Waterhouse | ERGA | 2025-05-20 | https://www.erga-biodiversity.eu/_files/ugd/e31d74_5ce6c6aba0314a1da8f6d1cb17a078a7.pdf?index=true# | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Guidelines for annotating protein coding genes in genomes | Alice Dennis, Jèssica Gómez, Leanne Haggerty, Lucile Soler, Aureliano Bombarley, Henrik Lantz, Florian Maumus, Hugues Roest Crollius, Fergal Martin, Jean-Marc Aury, Christian deGuttry, Robert Waterhouse, ERGA Annotation committee | ERGA | 2025-05-20 | https://www.erga-biodiversity.eu/structural-annotation# | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Open data policy for ERGA from collection through to publishing | Christian de Guttry, Tom Brown, Peter Harrison, Matthieu Muffato, Jennifer A. Leonard, Joana Pauperio, Katja Reichel, Nick Juty, Alice Mouton, Sadye Paez, Rebekah Oomen, Ciara Stauton, Ann Mc Cartney, Elena Buzan, Chiara Bortoluzzi, Robert Waterhouse | ERGA | 2025-05-20 | https://zenodo.org/records/10785625# | |
| Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts to automate the curation of BOLD DNA barcode libraries | Rutger Vos, Fabian Deister, Ben Price | DNA Barcoding | 2025-05-20 | https://doi.org/10.48546/workflowhub.workflow.833.1 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflow for illumina library preparation from degraded DNA samples | Stacey Dubbeldam | DNA Barcoding | 2025-05-20 | https://workflowhub.eu/sops/23?version=1 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Metabarcoding SOP for water from DNA extraction to amplicon libraries | Cátia Chaves, Filipa Martins | DNA Barcoding | 2025-05-20 | https://workflowhub.eu/sops/11# | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Metabarcoding SOP for soil from DNA extraction to amplicon libraries | Filipa Martins, Cátia Chaves, Laura Nájera-Cortazar | DNA Barcoding | 2025-05-20 | https://workflowhub.eu/sops/12?version=1# | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Metabarcoding workflow from eDNA samples to ITS2 amplicon libraries | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/4amplicon_ITS.html# | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Metabarcoding workflow from eDNA samples to 16S amplicon libraries | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/4amplicon_16S.html# | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Metabarcoding workflow from eDNA samples to COI amplicon libraries | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/4amplicon_COI.html# | |
| Sampling | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Guidelines for using a vampire sampler to collect aquatic eDNA | Sten Anslan | eDNA | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/1sampling_water.html# | |
| Sampling | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Guidelines for sampling soil for use in metabarcoding analyses | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/1sampling_soil.html# | |
| Sampling | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Guidelines for recording sampling data during fieldwork using PlutoF GO | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/1plutof.html# | |
| Sampling | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Guidelines for sampling flying insects with malaise traps | Sten Anslan | Pollinators | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/1sampling_malaise.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflow for species distribution modelling using HMSC a model-based approach for analyzing community ecological data | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/7interpret_hmsc.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Pipeline for metabarcoding from ITS illumina reads to ASVs and OTUs | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/6bioinfo_ITS.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Scripts to assign a taxonomy to ASVs using BLAST | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/6bioinfo_otherTools.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Pipeline for metabarcoding from 16S illumina reads to ASVs and OTUs | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/6bioinfo_16S.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Pipeline for metabarcoding from COI illumina reads to ASVs and OTUs | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/6bioinfo_COI.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Exploring the water mite fauna (Acari, Hydrachnidia) of the Madeira archipelago: DNA Barcoding reveals a remarkable species endemicity | Vladimir Pešić, Andrzej Zawal, Aleksandra Bankowska, Ricardo Araújo, Łukasz Sługocki, Tomasz Rewicz, Maja Krakowiak, Grzegorz Michoński, Dinis Girão, Luis P. da Silva, Inês Orfão, Pedro M. Raposeiro, Lorenzo Ballini, Robert Stryjecki, Torbjørn Ekrem, Sónia Ferreira | DNA Barcoding | 2025-04-22 | https://mapress.com/zt/article/view/zootaxa.5621.5.1/56106 | |
| Sampling, Data | Genome Sequencing | 7663 | List of samples delivered for Genome Sequencing under the Biodiversity Genomics Europe Project Genome Stream- WP5 Field to Lab Task 5.5 | Astrid Böhne, Rita Monteiro | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15166407 | |
| Sampling, Data | Genome Sequencing | 7663 | List of samples delivered for Genome Sequencing under the Biodiversity Genomics Europe Project Genome Stream- WP5 Field to Lab Task 5.6 | Astrid Böhne, Rita Monteiro | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15166424 | |
| Sampling, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Contextualising samples: Supporting reference genomes of European biodiversity through sample and associated metadata collection | Astrid Böhne, Rosa Fernandez, Jennifer Leonard, Ann McCartney, Seanna McTaggart, Jose Melo-Ferreira, Rita Monteiro, Rebekah Oomen, Olga V. Pettersson, Torsten Struck | Reference Genomes | 2025-04-18 | https://doi.org/10.1038/s44185-024-00053-7 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Delimiting Species—Prospects and Challenges for DNA Barcoding | Brent Emerson | DNA Barcoding | 2025-04-18 | https://doi.org/10.1111/mec.17677 | |
| Node development | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Building a Portuguese coalition for biodiversity genomics | Joao Marques et al. | ERGA | 2025-04-18 | https://doi.org/10.1038/s44185-024-00061-7 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Ensembl 2024 | Peter W. Harrison et al. | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15147608 | |
| Sequencing, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Taxonomic Position of Tetrops Peterkai Skorepa, 2020 (Coleoptera: Cerambycidae) and its Cryptic Distribution | Andrew Zamoroka, Oleksandr Zinenko | DNA Barcoding | 2025-04-18 | https://zenodo.org/records/15166422 | |
| Data | Genome Sequencing | 7663 | List of Bioproject Accessions for sequencing data (T7.1) and genome assemblies (T9.3) submitted to the ENA by the WSI-ToL as part of the genome stream of the Biodiversity Genomics Europe Project | Wiesia Johnson | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15235822 | |
| Data | Genome Sequencing | 7663 | List of Bioproject Accessions for sequencing data (T7.1) and genome assemblies (T9.3) submitted to the ENA by the Genoscope as part of the genome stream of the Biodiversity Genomics Europe Project | Pedro Oliveira | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15236627 | |
| Data | Genome Sequencing | 7663 | List of Bioproject Accessions for sequencing data (T7.1) and genome assemblies (T9.3) submitted to the ENA by the SciLife as part of the genome stream of the Biodiversity Genomics Europe Project | Olga V. Pettersson | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15236749 | |
| Data | Genome Sequencing | 7663 | List of Bioproject Accessions for sequencing data (T7.1) and genome assemblies (T9.3) submitted to the ENA by the UNIFI and UNIBA as part of the genome stream of the Biodiversity Genomics Europe Project | Claudio Ciofi, Carmela Gissi | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15237429 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Ensembl 2025 | Paola Louisse Mirabueno et al. | Reference Genomes | 2025-04-17 | https://doi.org/10.1093/nar/gkae1071 | |
| Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | How Fish Population Genomics Can Promote Sustainable Fisheries: A Road Map | Leif Andersson, Dorte Bekkevold, Florian Berg, Edward D. Farrell, Sabine Felkel, Mafalda S. Ferreira, Angela P. Fuentes-Pardo, Jake Goodall1, Mats Pettersson | Threatened Species | 2025-04-17 | https://doi.org/10.1146/annurev-animal-021122-102933 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered | Kessy Abarenkov et al. | DNA Barcoding | 2025-04-17 | https://doi.org/10.1093/nar/gkad1039 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | The InBIO Barcoding Initiative Database: DNA barcodes of Iberian Bees | Thomas Wood, Hugo Gaspar, Romain Le Divelec, Andreia Penado, Teresa Luísa Silva, Vanessa A. Mata, Joana Veríssimo, Denis Michez, Sílvia Castro, João Loureiro, Pedro Beja, Sónia Ferreira | DNA Barcoding | 2025-04-17 | https://doi.org/10.5281/zenodo.15173022 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of cuckoo wasps, with the description of new species from the Iberian Peninsula (Hymenoptera, Chrysididae) | Paolo Rosa,Thomas Wood, Teresa Luisa Silva, Joana Veríssimo, Vanessa Mata, Denis Michez, Pedro Beja, Sónia Ferreira | New species | 2025-04-17 | https://doi.org/10.5281/zenodo.15189800 | |
| Sampling | DNA Barcoding | 6084 | Biodiversity Genomics Europe | High Mountain Systems - Arthropod sampling with Malaise traps | Laura Najera, Sonia Ferreira, Vanessa Mata, Pedro Beja | Monitoring | 2025-04-10 | https://doi.org/10.48546/workflowhub.sop.17.3 | |
| Sampling | DNA Barcoding | 6084 | Biodiversity Genomics Europe | Ecological Restoration - Soil sampling | Laura Najera, Albano Beja-Pereira, Pedro Beja | Monitoring | 2025-04-10 | https://doi.org/10.48546/workflowhub.sop.19.1 | |
| Sampling | DNA Barcoding | 6084 | Biodiversity Genomics Europe | Pollinator Communities - Malaise trap sampling | Laura Najera, Sonia Ferreira, Pedro Beja | Monitoring | 2025-04-10 | https://doi.org/10.48546/workflowhub.sop.18.1 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | New records of aturid water mites from Portugal, with the integrative description of one new species (Acari, Hydrachnidia, Aturidae) | Vladimir Pešić, Harry Smit, Dinis Girão, Alessio Iannucci, Elisabeth Stur, Sónia Ferreira | New species | 2025-04-08 | https://doi.org/10.37828/em.2024.80.19 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Molecular phylogeny reveals three new water mite species of the genus Teutonia Koenike, 1889, from Portugal (Acari, Hydrachnidia, Teutoniidae) | Vladimir Pešić, Ekatarina S. Konopleva, Alessio Iannucci, Sónia Ferreira, Elisabeth Stur | New species | 2025-04-08 | https://doi.org/10.11158/saa.30.2.14 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Loboptera subterranea | Heriberto López, Pedro Oromí, Xavier Belles, Guillem Ylla, Nuria Escudero, Rosa Fernández, Astrid Böhne, Marta Gut, Laura Aguilera, Tyler Alioto, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Rita Monteiro | Reference Genomes | 2025-03-10 | https://www.biorxiv.org/content/10.1101/2025.02.06.636782v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Rupicapra rupicapra | Elena Buzan, Aja Bončina, Boštjan Pokorny, Nuria Escudero, Rosa Fernández, Astrid Böhne, Rita Monteiro, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Leanne Haggerty, Fergal Martin, Diego De Panis | Reference Genomes | 2025-03-10 | https://www.biorxiv.org/content/10.1101/2024.11.20.624344v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Coenonympha oedippus | Tatjana Čelik, Tjaša Lokovšek, Elena Bužan, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi | Reference Genomes | 2025-02-28 | https://www.biorxiv.org/content/10.1101/2025.02.10.637396v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Androsace saussurei | Sébastien Lavergne, Alexy Rosa, Chuan Peng, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten Struck, Rebekah A. Oomen, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Emilie Téodori, Lola Demirdjian, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Tom Brown | Reference Genomes | 2025-02-28 | https://www.biorxiv.org/content/10.1101/2025.01.21.634019v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA BGE Annotated Genomes | Ensembl | Genome Annotation | 2025-02-27 | https://projects.ensembl.org/erga-bge/ | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | BGE Genome Sequence Assemblies | ENA, ERGA Community | ENA database | 2025-02-27 | https://www.ebi.ac.uk/ena/browser/text-search?query=Biodiversity%20genomics%20europe | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Pinctada radiata | Katerina Vasileiadou, Tereza Manousaki, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Benjamin Istace, Arnaud Couloux, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi | Reference Genomes | 2025-02-21 | https://www.biorxiv.org/content/10.1101/2025.01.17.632165v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Arca noae | Katerina Vasileiadou, Tereza Manousaki, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Simone Duprat, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Leanne Haggerty, Fergal Martin, Chiara Bortoluzzi | Reference Genomes | 2025-02-21 | https://www.biorxiv.org/content/10.1101/2025.02.10.632159v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Stigmatoteuthis arcturi | Fernando Ángel Fernández-Álvarez, Ainhoa Bernal-Bajo, Nuria Escudero, María Conejero, Ana Riesgo, Rosa Fernández, Rita Monteiro, Astrid Böhne, Laura Aguilera, Marta Gut, Tyler S. Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tom Brown | Reference Genomes | 2025-02-21 | https://www.biorxiv.org/content/10.1101/2025.01.13.632676v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Cheirolophus tagananensis | Jaume Pellicer, Teresa Garnatje, Daniel Vitales, Oriane Hidalgo, Joan Vallès, Alfredo García-Fernández, Arnoldo Santos-Guerra, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, Abitha Thomas, Benjamin Jackson, Jonathan MD Wood, Kerstin Howe, Mark Blaxter, Shane McCarthy, Chiara Bortoluzzi | Reference Genomes | 2025-02-21 | https://www.biorxiv.org/content/10.1101/2025.01.24.634661v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Graellsia isabellae | Marta Vila, Neus Marí-Mena, Roger Vila, Ana Riesgo, Daniel García-Souto, Carlos Lopez-Vaamonde, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten Hugo Struck, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz Rodriguez, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi | Reference Genomes | 2025-02-06 | https://www.biorxiv.org/content/10.1101/2025.01.08.631683v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Erebia palarica | Marta Vila, Laura Torrado-Blanco, Nils Ryrholm, David Romero-Pedreira, María Conejero, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten Hugo Struck, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz Rodriguez, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi | Reference Genomes | 2025-02-06 | https://www.biorxiv.org/content/10.1101/2025.01.08.631636v1 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | DNA barcode library of Portuguese water mites, with the descriptions of two new species (Acari, Hydrachnidia) | Vladimir Pešić, Andrzej Zawal, Sónia Ferreira, Laura Benitez-Bosco, Ana Cruz-Oliveira, Dinis Girão, Adriana Padilha, Paolo Turaccio, Samantha Rossini, Lorenzo Ballini, Giorgia Staffoni, Sara Fratini, Claudio Ciofi, Alessio Iannucci, Torbjørn Ekrem, Elisabeth Stur | New species | 2025-01-23 | https://zookeys.pensoft.net/article/131730/ | |
| Node development, Sampling, Sequencing, Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Biodiversity Genomics Europe at the BG24 conference: scaling up capacity, production and application | BGE Communications | ERGA | 2025-01-23 | https://youtu.be/mD_134uX-3g | |
| Node development, Sampling, Sequencing, Data, Application | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | ERGA session at the Biodiversity Genomics conference 2024 (BG24) | BGE Communications | ERGA | 2025-01-23 | https://www.youtube.com/watch?v=1XFn11pqmvM | |
| Node development, Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Ibol Europe: A regional nexus for the DNA barcoding community | BGE Communications | iBOL Europe | 2025-01-23 | https://www.youtube.com/watch?v=P-6KWsGGvO4 | |
| Node development, Sampling, Sequencing, Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | BGE Training Handbook: How to prepare and deliver a BGE joint network training workshop | Various authors | DNA Barcoding | 2024-09-09 | https://biodiversitygenomics.eu/wp-content/uploads/2025/08/Training_Handbook_v1.4-7-08-2025.pdf | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Valencia hispanica | Marc Ventura, Nati Franch, Rosa Fernández, Javier Palma-Guerrero, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Tyler S. Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Leanne Haggerty, Fergal Martin, Thomas Brown | Reference Genomes | 2024-08-13 | https://www.biorxiv.org/content/10.1101/2024.07.31.604920v1.full | |
| Node development, Sampling, Sequencing, Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/web-domain_4683565.png | Biodiversity Genomics Europe 2023 (full content) | BGE Communications | ERGA | 2024-08-06 | https://biodiversitygenomics.eu/5326-2/ | |
| Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Maximising the impact of major biodiversity genomic projects in meeting stakeholder needs (BG23 Conference) | BGE Communications | Monitoring | 2024-08-05 | https://www.youtube.com/watch?v=G6tIsEorHSo | |
| Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Applications: using DNA sequencing to understand and conserve biodiversity - DNA Barcoding (BG23 Conference) | BGE Communications | DNA Barcoding | 2024-08-05 | https://www.youtube.com/watch?v=_rCpZq3Joko | |
| Application | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Applications: using DNA sequencing to understand and conserve biodiversity - Whole Genome Sequencing (BG23 Conference) | BGE Communications | Reference Genomes | 2024-08-05 | https://www.youtube.com/watch?v=LAEO5OYshQE | |
| Node development, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Introductory session of the BGE Day at the BG23 Conference | BGE Communications | ERGA | 2024-08-05 | https://www.youtube.com/watch?v=fLcK9pjl0Ac | |
| Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Increasing utilisation of genomics data in biodiversity characterisation and conservation (BG23 Conference) | BGE Communications | Monitoring | 2024-08-05 | https://www.youtube.com/watch?v=8OtEuGhNGMk | |
| Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | Genomics for the conservation and recovery of threatened species (BG23 Conference) | Cock van Oosterhout | Threatened Species | 2024-08-05 | https://drive.google.com/file/d/14haJJBL8fewzcY0PtxWSLsB0Ambs2ZZA/view?usp=drive_link | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | Dark-taxon barcoding (BG23 Conference) | Rudolf Meier | Dark taxa | 2024-08-05 | https://drive.google.com/file/d/1hnXBENKuz1SKy2irNDuDpxZghcdI-wOI/view?usp=drive_link | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | Monitoring genetic diversity: a genomics-based pilot study (BG23 Conference) | Martin C. Fischer | Monitoring | 2024-08-05 | https://drive.google.com/file/d/1m7_h5SowFCjQXBpBQ8ai_GqYm6k1OfpK/view?usp=drive_link | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | Monitoring biodiversity from airborne DNA (BG23 Conference) | Elizabeth Clare | DNA Barcoding | 2024-08-05 | https://drive.google.com/file/d/12LFZoYXO0nsqm-QzZ6Qu_-1IPLoHCAGV/view?usp=sharing | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | DNA barcoding for long term pollinator biomonitoring (BG23 Conference) | Claire Carvell, Mara Lawniczak | Monitoring | 2024-08-05 | https://drive.google.com/file/d/1G3Q7rLN0WWaRym23kNOYYUJCjSMkNOpw/view?usp=sharing |