BIODIVERSITY GENOMICS EUROPE
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| Type | Title | Author | Tags | Date | ||||
|---|---|---|---|---|---|---|---|---|
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Extensive DNA Barcoding of Lepidoptera of Crete (Greece) Reveals Significant Taxonomic and Faunistic Gaps and Supports the First Comprehensive Checklist of the Island’s Fauna | Peter Huemer, Kai Berggren, Leif Aarvik, Erwin Rennwald, Axel Hausmann, Andreas Segerer, Giorgia Staffoni, Aina Mærk Aspaas, Apostolos Trichas, Paul D. N. Hebert | New species | 2025-05-26 | https://doi.org/10.3390/insects16050438 | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/spotlight.png | Spotlight on Metabarcoding methods | BGE Consortium | eDNA | 2025-05-26 | https://drive.google.com/file/d/1FgTnIpSt0Svn4LAIxBbGrZy4KiLC-WtB/view?usp=sharing | |
| Sequencing, Data | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/spotlight.png | Spotlight on Data Repositories | BGE Consortium | ENA database | 2025-05-21 | https://drive.google.com/file/d/15XmApXGz8PqG7b07YABYZ7FfvGTEEV8C/view?usp=sharing | |
| Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | Searchable list of DNA barcodes (COI) for animal species in Europe | BGE Consortium | DNA Barcoding | 2025-05-20 | https://species.iboleurope.org/ | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | Multiple DNA barcode (ITS UNITE) datasets for eukaryotes | Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson, Urmas Kõljalg | DNA Barcoding | 2025-05-20 | https://unite.ut.ee/repository.php | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | DNA barcode (COI) database for butterflies in Europe | Leonardo Dapporto | DNA Barcoding | 2025-05-20 | https://github.com/leondap/iodatabase | |
| Sequencing, Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | BGE DNA barcodes in BOLD for species in Europe | BGE Consortium | DNA Barcoding | 2025-05-20 | https://bench.boldsystems.org/index.php/MAS_Management_DataConsole?codes=BGE | |
| Sampling | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | Genome sequencing species nomination lists from ERGA | ERGA Community | ERGA | 2025-05-20 | https://docs.google.com/spreadsheets/d/1Bze-5sHTSSMk4Up06zg4XQf52aAtdQGcC5wOThyM7eI/edit?gid=1492253232#gid=1492253232 | |
| Sampling, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | Animal genome sizes based on traditional feulgen measurements | Ana Riesgo, Maria Conejero | Genome size | 2025-05-20 | https://doi.org/10.5281/zenodo.10717906 | |
| Sampling, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | BGE genome sequencing species list with attributes on GoaT | ERGA, Wellcome Sanger Institute | GoaT | 2025-05-20 | http://tinyurl.com/mrsh5a94 | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training-1.png | BGE workflows for metabarcoding from soils, water and malaise traps | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/index.html# | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | BGE genome sequencing tracker on the ERGA data portal | ERGA, EMBL-EBI | ERGA | 2025-05-20 | https://portal.erga-biodiversity.eu/status_tracking?0=ERGA%20BGE&1=phylogenyCurrentClass%20-%20kingdom | |
| Sampling | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Script for BGE genome sequencing species selection | Torsten Struck | ERGA | 2025-05-20 | https://github.com/torstenstruck/BGE_species_priorization | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipeline to remove duplications in genome assemblies with Purge-Dups | Tom Brown | ERGA | 2025-05-20 | https://doi.org/10.48546/workflowhub.workflow.506.2 | |
| Sampling, Data | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/spotlight.png | Spotlight Species Selection | BGE Consortium | New species | 2025-05-20 | https://drive.google.com/file/d/1Z2urv3gWRxg0ZzJnWdBSHoAjInud3340/view?usp=sharing | |
| Node development | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/policy.png | BGE first Policy Brochure | BGE Communications | Policy | 2025-05-20 | https://drive.google.com/file/d/1ZX6_klwHXhkTpExhZQ_7CemVNQbVFIHb/view?usp=sharing | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipeline for genome scaffolding with Hi-C reads using YaHS | Tom Brown | ERGA | 2025-05-20 | https://doi.org/10.48546/workflowhub.workflow.796.2 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipeline for visualising genome Hi-C maps with PretextView and HiGlass | Tom Brown | ERGA | 2025-05-20 | https://doi.org/10.48546/workflowhub.workflow.795.2 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts to facilitate uploading ERGA genome assembly data to ENA | Tyler Alioto, Tom Brown, Diego De Panis | ENA database | 2025-05-20 | https://github.com/ERGA-consortium/ERGA-submission | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Multiple ERGA pipelines for genome assembly and annotation | Diego De Panis, Tom Brown, Phuong Doan, Anestis Gkanogiannis, Jes Gomez | ERGA | 2025-05-20 | https://github.com/ERGA-consortium/pipelines | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Workflow to derive barcode sequences from genome skim data | Dan Parsons | DNA Barcoding | 2025-05-20 | https://workflowhub.eu/workflows/1345 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Pipelines to assemble and analyse mitochondrial genomes from skim data | Oliver White, Rutger Vos, Eli Chadwick, Dick Groenenberg, Douglas Lowe, Dan Parsons, Ben Price | DNA Barcoding | 2025-05-20 | https://github.com/o-william-white/skim2mito | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts and data to infer very large DNA barcode phylogenies | Rutger Vos | DNA Barcoding | 2025-05-20 | https://workflowhub.eu/workflows/706?version=1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training-1.png | Guidelines covering the major steps for generating a reference genome | Tom Brown, Diego de Panis, Joao Pimenta, Christian de Guttry, Ann Mc Cartney, Rita Monteiro, Javier Palma, Luisa Marins, Astrid Böhne, Robert Waterhouse, Camila Mazzoni | Reference Genomes | 2025-05-20 | https://www.erga-biodiversity.eu/erga-satellite-genomes# | |
| Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | PipeCraft2 pipeline for metabarcoding data analysis | Sten Anslan, Vladimir Mikryukov, Mohammad Bahram, Indrek Hiiesalu, Leho Tedersoo | DNA Barcoding | 2025-05-20 | https://github.com/pipecraft2/pipecraft | |
| Sampling | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | SOP for submission of ERGA metadata | Jennifer A. Leonard, Olga Vinnere Petterson, Seanna McTaggert, Ann McCartney, Luísa Marins, Torsten Struck, Martin Husemann, Carmela Gissi, Isabelle Florent, KatjaReichel, Seanna McTaggart, Felix Shaw, Joana Pauperio, Josephine Burgin, Rita Monteiro, Astrid Böhne, ERGA Consortium | ERGA | 2025-05-20 | ||
| Node development | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | ERGA governance document | Ciara Staunton | ERGA | 2025-05-20 | https://b2drop.eudat.eu/s/xrLHFsBEEBS38Et# | |
| Node development | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | ERGA code of conduct | Chiara Bortoluzzi, Elena Buzan, Christian de Guttry, Diego de Panis, Fabrizio Ghiselli, Giulio Formenti, Jennifer Leonard, Ann Mc Cartney, Merce Montoliu, Alice Mouton, Sadye Paez, Robert Waterhouse | ERGA | 2025-05-20 | https://www.erga-biodiversity.eu/_files/ugd/e31d74_5ce6c6aba0314a1da8f6d1cb17a078a7.pdf?index=true# | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Guidelines for annotating protein coding genes in genomes | Alice Dennis, Jèssica Gómez, Leanne Haggerty, Lucile Soler, Aureliano Bombarley, Henrik Lantz, Florian Maumus, Hugues Roest Crollius, Fergal Martin, Jean-Marc Aury, Christian deGuttry, Robert Waterhouse, ERGA Annotation committee | ERGA | 2025-05-20 | https://www.erga-biodiversity.eu/structural-annotation# | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Open data policy for ERGA from collection through to publishing | Christian de Guttry, Tom Brown, Peter Harrison, Matthieu Muffato, Jennifer A. Leonard, Joana Pauperio, Katja Reichel, Nick Juty, Alice Mouton, Sadye Paez, Rebekah Oomen, Ciara Stauton, Ann Mc Cartney, Elena Buzan, Chiara Bortoluzzi, Robert Waterhouse | ERGA | 2025-05-20 | https://zenodo.org/records/10785625# | |
| Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/software_platforms.png | Scripts to automate the curation of BOLD DNA barcode libraries | Rutger Vos, Fabian Deister, Ben Price | DNA Barcoding | 2025-05-20 | https://doi.org/10.48546/workflowhub.workflow.833.1 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflow for illumina library preparation from degraded DNA samples | Stacey Dubbeldam | DNA Barcoding | 2025-05-20 | https://workflowhub.eu/sops/23?version=1 | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Metabarcoding SOP for water from DNA extraction to amplicon libraries | Cátia Chaves, Filipa Martins | DNA Barcoding | 2025-05-20 | https://workflowhub.eu/sops/11# | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Metabarcoding SOP for soil from DNA extraction to amplicon libraries | Filipa Martins, Cátia Chaves, Laura Nájera-Cortazar | DNA Barcoding | 2025-05-20 | https://workflowhub.eu/sops/12?version=1# | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Metabarcoding workflow from eDNA samples to ITS2 amplicon libraries | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/4amplicon_ITS.html# | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Metabarcoding workflow from eDNA samples to 16S amplicon libraries | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/4amplicon_16S.html# | |
| Sequencing | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Metabarcoding workflow from eDNA samples to COI amplicon libraries | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/4amplicon_COI.html# | |
| Sampling | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Guidelines for using a vampire sampler to collect aquatic eDNA | Sten Anslan | eDNA | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/1sampling_water.html# | |
| Sampling | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Guidelines for sampling soil for use in metabarcoding analyses | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/1sampling_soil.html# | |
| Sampling | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Guidelines for recording sampling data during fieldwork using PlutoF GO | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/1plutof.html# | |
| Sampling | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Guidelines for sampling flying insects with malaise traps | Sten Anslan | Pollinators | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/1sampling_malaise.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Workflow for species distribution modelling using HMSC a model-based approach for analyzing community ecological data | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/7interpret_hmsc.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Pipeline for metabarcoding from ITS illumina reads to ASVs and OTUs | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/6bioinfo_ITS.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Scripts to assign a taxonomy to ASVs using BLAST | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/6bioinfo_otherTools.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Pipeline for metabarcoding from 16S illumina reads to ASVs and OTUs | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/6bioinfo_16S.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | Pipeline for metabarcoding from COI illumina reads to ASVs and OTUs | Sten Anslan | DNA Barcoding | 2025-05-20 | https://bioscanflow.readthedocs.io/en/latest/6bioinfo_COI.html# | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Exploring the water mite fauna (Acari, Hydrachnidia) of the Madeira archipelago: DNA Barcoding reveals a remarkable species endemicity | Vladimir Pešić, Andrzej Zawal, Aleksandra Bankowska, Ricardo Araújo, Łukasz Sługocki, Tomasz Rewicz, Maja Krakowiak, Grzegorz Michoński, Dinis Girão, Luis P. da Silva, Inês Orfão, Pedro M. Raposeiro, Lorenzo Ballini, Robert Stryjecki, Torbjørn Ekrem, Sónia Ferreira | DNA Barcoding | 2025-04-22 | https://mapress.com/zt/article/view/zootaxa.5621.5.1/56106 | |
| Sampling, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | List of samples delivered for Genome Sequencing under the Biodiversity Genomics Europe Project Genome Stream- WP5 Field to Lab Task 5.5 | Astrid Böhne, Rita Monteiro | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15166407 | |
| Sampling, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | List of samples delivered for Genome Sequencing under the Biodiversity Genomics Europe Project Genome Stream- WP5 Field to Lab Task 5.6 | Astrid Böhne, Rita Monteiro | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15166424 | |
| Sampling, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Contextualising samples: Supporting reference genomes of European biodiversity through sample and associated metadata collection | Astrid Böhne, Rosa Fernandez, Jennifer Leonard, Ann McCartney, Seanna McTaggart, Jose Melo-Ferreira, Rita Monteiro, Rebekah Oomen, Olga V. Pettersson, Torsten Struck | Reference Genomes | 2025-04-18 | https://doi.org/10.1038/s44185-024-00053-7 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Delimiting Species—Prospects and Challenges for DNA Barcoding | Brent Emerson | DNA Barcoding | 2025-04-18 | https://doi.org/10.1111/mec.17677 | |
| Node development | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Building a Portuguese coalition for biodiversity genomics | Joao Marques et al. | ERGA | 2025-04-18 | https://doi.org/10.1038/s44185-024-00061-7 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Ensembl 2024 | Peter W. Harrison et al. | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15147608 | |
| Sequencing, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Taxonomic Position of Tetrops Peterkai Skorepa, 2020 (Coleoptera: Cerambycidae) and its Cryptic Distribution | Andrew Zamoroka, Oleksandr Zinenko | DNA Barcoding | 2025-04-18 | https://zenodo.org/records/15166422 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | List of Bioproject Accessions for sequencing data (T7.1) and genome assemblies (T9.3) submitted to the ENA by the WSI-ToL as part of the genome stream of the Biodiversity Genomics Europe Project | Wiesia Johnson | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15235822 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | List of Bioproject Accessions for sequencing data (T7.1) and genome assemblies (T9.3) submitted to the ENA by the Genoscope as part of the genome stream of the Biodiversity Genomics Europe Project | Pedro Oliveira | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15236627 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | List of Bioproject Accessions for sequencing data (T7.1) and genome assemblies (T9.3) submitted to the ENA by the SciLife as part of the genome stream of the Biodiversity Genomics Europe Project | Olga V. Pettersson | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15236749 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/04/database.png | List of Bioproject Accessions for sequencing data (T7.1) and genome assemblies (T9.3) submitted to the ENA by the UNIFI and UNIBA as part of the genome stream of the Biodiversity Genomics Europe Project | Claudio Ciofi, Carmela Gissi | Reference Genomes | 2025-04-18 | https://doi.org/10.5281/zenodo.15237429 | |
| Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Ensembl 2025 | Paola Louisse Mirabueno et al. | Reference Genomes | 2025-04-17 | https://doi.org/10.1093/nar/gkae1071 | |
| Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | How Fish Population Genomics Can Promote Sustainable Fisheries: A Road Map | Leif Andersson, Dorte Bekkevold, Florian Berg, Edward D. Farrell, Sabine Felkel, Mafalda S. Ferreira, Angela P. Fuentes-Pardo, Jake Goodall1, Mats Pettersson | Threatened Species | 2025-04-17 | https://doi.org/10.1146/annurev-animal-021122-102933 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered | Kessy Abarenkov et al. | DNA Barcoding | 2025-04-17 | https://doi.org/10.1093/nar/gkad1039 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | The InBIO Barcoding Initiative Database: DNA barcodes of Iberian Bees | Thomas Wood, Hugo Gaspar, Romain Le Divelec, Andreia Penado, Teresa Luísa Silva, Vanessa A. Mata, Joana Veríssimo, Denis Michez, Sílvia Castro, João Loureiro, Pedro Beja, Sónia Ferreira | DNA Barcoding | 2025-04-17 | https://doi.org/10.5281/zenodo.15173022 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of cuckoo wasps, with the description of new species from the Iberian Peninsula (Hymenoptera, Chrysididae) | Paolo Rosa,Thomas Wood, Teresa Luisa Silva, Joana Veríssimo, Vanessa Mata, Denis Michez, Pedro Beja, Sónia Ferreira | New species | 2025-04-17 | https://doi.org/10.5281/zenodo.15189800 | |
| Sampling | DNA Barcoding | Biodiversity Genomics Europe | High Mountain Systems - Arthropod sampling with Malaise traps | Laura Najera, Sonia Ferreira, Vanessa Mata, Pedro Beja | Monitoring | 2025-04-10 | https://doi.org/10.48546/workflowhub.sop.17.3 | ||
| Sampling | DNA Barcoding | Biodiversity Genomics Europe | Ecological Restoration - Soil sampling | Laura Najera, Albano Beja-Pereira, Pedro Beja | Monitoring | 2025-04-10 | https://doi.org/10.48546/workflowhub.sop.19.1 | ||
| Sampling | DNA Barcoding | Biodiversity Genomics Europe | Pollinator Communities - Malaise trap sampling | Laura Najera, Sonia Ferreira, Pedro Beja | Monitoring | 2025-04-10 | https://doi.org/10.48546/workflowhub.sop.18.1 | ||
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | New records of aturid water mites from Portugal, with the integrative description of one new species (Acari, Hydrachnidia, Aturidae) | Vladimir Pešić, Harry Smit, Dinis Girão, Alessio Iannucci, Elisabeth Stur, Sónia Ferreira | New species | 2025-04-08 | https://doi.org/10.37828/em.2024.80.19 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | Molecular phylogeny reveals three new water mite species of the genus Teutonia Koenike, 1889, from Portugal (Acari, Hydrachnidia, Teutoniidae) | Vladimir Pešić, Ekatarina S. Konopleva, Alessio Iannucci, Sónia Ferreira, Elisabeth Stur | New species | 2025-04-08 | https://doi.org/10.11158/saa.30.2.14 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Loboptera subterranea | Heriberto López, Pedro Oromí, Xavier Belles, Guillem Ylla, Nuria Escudero, Rosa Fernández, Astrid Böhne, Marta Gut, Laura Aguilera, Tyler Alioto, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Rita Monteiro | Reference Genomes | 2025-03-10 | https://www.biorxiv.org/content/10.1101/2025.02.06.636782v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Rupicapra rupicapra | Elena Buzan, Aja Bončina, Boštjan Pokorny, Nuria Escudero, Rosa Fernández, Astrid Böhne, Rita Monteiro, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Leanne Haggerty, Fergal Martin, Diego De Panis | Reference Genomes | 2025-03-10 | https://www.biorxiv.org/content/10.1101/2024.11.20.624344v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Coenonympha oedippus | Tatjana Čelik, Tjaša Lokovšek, Elena Bužan, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi | Reference Genomes | 2025-02-28 | https://www.biorxiv.org/content/10.1101/2025.02.10.637396v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Androsace saussurei | Sébastien Lavergne, Alexy Rosa, Chuan Peng, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten Struck, Rebekah A. Oomen, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Emilie Téodori, Lola Demirdjian, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Tom Brown | Reference Genomes | 2025-02-28 | https://www.biorxiv.org/content/10.1101/2025.01.21.634019v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA BGE Annotated Genomes | Ensembl | Genome Annotation | 2025-02-27 | https://projects.ensembl.org/erga-bge/ | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | BGE Genome Sequence Assemblies | ENA, ERGA Community | ENA database | 2025-02-27 | https://www.ebi.ac.uk/ena/browser/text-search?query=Biodiversity%20genomics%20europe | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Pinctada radiata | Katerina Vasileiadou, Tereza Manousaki, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Benjamin Istace, Arnaud Couloux, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Chiara Bortoluzzi | Reference Genomes | 2025-02-21 | https://www.biorxiv.org/content/10.1101/2025.01.17.632165v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Arca noae | Katerina Vasileiadou, Tereza Manousaki, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Simone Duprat, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Leanne Haggerty, Fergal Martin, Chiara Bortoluzzi | Reference Genomes | 2025-02-21 | https://www.biorxiv.org/content/10.1101/2025.02.10.632159v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Stigmatoteuthis arcturi | Fernando Ángel Fernández-Álvarez, Ainhoa Bernal-Bajo, Nuria Escudero, María Conejero, Ana Riesgo, Rosa Fernández, Rita Monteiro, Astrid Böhne, Laura Aguilera, Marta Gut, Tyler S. Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tom Brown | Reference Genomes | 2025-02-21 | https://www.biorxiv.org/content/10.1101/2025.01.13.632676v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Cheirolophus tagananensis | Jaume Pellicer, Teresa Garnatje, Daniel Vitales, Oriane Hidalgo, Joan Vallès, Alfredo García-Fernández, Arnoldo Santos-Guerra, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, Abitha Thomas, Benjamin Jackson, Jonathan MD Wood, Kerstin Howe, Mark Blaxter, Shane McCarthy, Chiara Bortoluzzi | Reference Genomes | 2025-02-21 | https://www.biorxiv.org/content/10.1101/2025.01.24.634661v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Graellsia isabellae | Marta Vila, Neus Marí-Mena, Roger Vila, Ana Riesgo, Daniel García-Souto, Carlos Lopez-Vaamonde, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten Hugo Struck, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz Rodriguez, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi | Reference Genomes | 2025-02-06 | https://www.biorxiv.org/content/10.1101/2025.01.08.631683v1 | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Erebia palarica | Marta Vila, Laura Torrado-Blanco, Nils Ryrholm, David Romero-Pedreira, María Conejero, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten Hugo Struck, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz Rodriguez, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi | Reference Genomes | 2025-02-06 | https://www.biorxiv.org/content/10.1101/2025.01.08.631636v1 | |
| Data | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/publications.png | DNA barcode library of Portuguese water mites, with the descriptions of two new species (Acari, Hydrachnidia) | Vladimir Pešić, Andrzej Zawal, Sónia Ferreira, Laura Benitez-Bosco, Ana Cruz-Oliveira, Dinis Girão, Adriana Padilha, Paolo Turaccio, Samantha Rossini, Lorenzo Ballini, Giorgia Staffoni, Sara Fratini, Claudio Ciofi, Alessio Iannucci, Torbjørn Ekrem, Elisabeth Stur | New species | 2025-01-23 | https://zookeys.pensoft.net/article/131730/ | |
| Node development, Sampling, Sequencing, Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Biodiversity Genomics Europe at the BG24 conference: scaling up capacity, production and application | BGE Communications | ERGA | 2025-01-23 | https://youtu.be/mD_134uX-3g | |
| Node development, Sampling, Sequencing, Data, Application | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | ERGA session at the Biodiversity Genomics conference 2024 (BG24) | BGE Communications | ERGA | 2025-01-23 | https://www.youtube.com/watch?v=1XFn11pqmvM | |
| Node development, Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Ibol Europe: A regional nexus for the DNA barcoding community | BGE Communications | iBOL Europe | 2025-01-23 | https://www.youtube.com/watch?v=P-6KWsGGvO4 | |
| Node development, Sampling, Sequencing, Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2025/05/Methods_Training.png | BGE Training Handbook: How to prepare and deliver a BGE joint network training workshop | Various authors | DNA Barcoding | 2024-09-09 | https://drive.google.com/file/d/17Y5lWUbfS_3ccLBESdv04hFOtZcl4FG_/view?usp=sharing | |
| Sequencing, Data | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/samples_barcodes_genomes.png | ERGA-BGE genome of Valencia hispanica | Marc Ventura, Nati Franch, Rosa Fernández, Javier Palma-Guerrero, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Tyler S. Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Leanne Haggerty, Fergal Martin, Thomas Brown | Reference Genomes | 2024-08-13 | https://www.biorxiv.org/content/10.1101/2024.07.31.604920v1.full | |
| Node development, Sampling, Sequencing, Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/web-domain_4683565.png | Biodiversity Genomics Europe 2023 (full content) | BGE Communications | ERGA | 2024-08-06 | https://biodiversitygenomics.eu/5326-2/ | |
| Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Maximising the impact of major biodiversity genomic projects in meeting stakeholder needs (BG23 Conference) | BGE Communications | Monitoring | 2024-08-05 | https://www.youtube.com/watch?v=G6tIsEorHSo | |
| Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Applications: using DNA sequencing to understand and conserve biodiversity - DNA Barcoding (BG23 Conference) | BGE Communications | DNA Barcoding | 2024-08-05 | https://www.youtube.com/watch?v=_rCpZq3Joko | |
| Application | Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Applications: using DNA sequencing to understand and conserve biodiversity - Whole Genome Sequencing (BG23 Conference) | BGE Communications | Reference Genomes | 2024-08-05 | https://www.youtube.com/watch?v=LAEO5OYshQE | |
| Node development, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Introductory session of the BGE Day at the BG23 Conference | BGE Communications | ERGA | 2024-08-05 | https://www.youtube.com/watch?v=fLcK9pjl0Ac | |
| Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/video_2791441.png | Increasing utilisation of genomics data in biodiversity characterisation and conservation (BG23 Conference) | BGE Communications | Monitoring | 2024-08-05 | https://www.youtube.com/watch?v=8OtEuGhNGMk | |
| Data, Application | DNA Barcoding, Genome Sequencing | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | Genomics for the conservation and recovery of threatened species (BG23 Conference) | Cock van Oosterhout | Threatened Species | 2024-08-05 | https://drive.google.com/file/d/14haJJBL8fewzcY0PtxWSLsB0Ambs2ZZA/view?usp=drive_link | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | Dark-taxon barcoding (BG23 Conference) | Rudolf Meier | Dark taxa | 2024-08-05 | https://drive.google.com/file/d/1hnXBENKuz1SKy2irNDuDpxZghcdI-wOI/view?usp=drive_link | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | Monitoring genetic diversity: a genomics-based pilot study (BG23 Conference) | Martin C. Fischer | Monitoring | 2024-08-05 | https://drive.google.com/file/d/1m7_h5SowFCjQXBpBQ8ai_GqYm6k1OfpK/view?usp=drive_link | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | Monitoring biodiversity from airborne DNA (BG23 Conference) | Elizabeth Clare | DNA Barcoding | 2024-08-05 | https://drive.google.com/file/d/12LFZoYXO0nsqm-QzZ6Qu_-1IPLoHCAGV/view?usp=sharing | |
| Sampling, Sequencing, Data, Application | DNA Barcoding | https://biodiversitygenomics.eu/wp-content/uploads/2024/08/scientific_presentation.png | DNA barcoding for long term pollinator biomonitoring (BG23 Conference) | Claire Carvell, Mara Lawniczak | Monitoring | 2024-08-05 | https://drive.google.com/file/d/1G3Q7rLN0WWaRym23kNOYYUJCjSMkNOpw/view?usp=sharing |
